%% This BibTeX bibliography file was created using BibDesk.
%% http://bibdesk.sourceforge.net/


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@techreport{spherical-validity,
	Author = {Chunfeng Huang and Haimeng Zhang and Scott Robeson},
	Date-Added = {2011-03-15 18:30:10 +0000},
	Date-Modified = {2011-03-15 18:31:22 +0000},
	Institution = {Department of Statistics, University of Indiana},
	Number = {TR-09-01},
	Title = {on the validity of covariance and variogram functions on the sphere},
	Year = {2009}}

@inproceedings{atlas,
	Author = {Jim Demmel and Jack Dongarra and Victor Eijkhout and Erika Fuentes and Antoine Petitet and Rich Vuduc and R. Clint Whaley and Katherine Yelick},
	Booktitle = {Proceedings of the IEEE},
	Pages = {2005},
	Title = {Self adapting linear algebra algorithms and software},
	Year = {2005}}

@book{diggle,
	Author = {P J Diggle and P J {Ribeiro Jr.}},
	Date-Added = {2010-05-21 11:46:55 +0100},
	Date-Modified = {2010-05-21 11:47:58 +0100},
	Publisher = {Springer},
	Series = {Springer Series in Statistics},
	Title = {Model-based geostatistics},
	Year = {2007}}

@book{gillespie,
	Author = {J H Gillespie},
	Date-Added = {2010-05-21 11:42:22 +0100},
	Date-Modified = {2010-05-21 11:44:38 +0100},
	Publisher = {The Johns Hopkins University Press},
	Title = {Population genetics: a concise guide},
	Year = {2004}}

@article{duffy-vivax,
	Author = {L H Miller and S J Mason and D F Clyde and M H McGinniss},
	Date-Added = {2010-05-21 11:40:31 +0100},
	Date-Modified = {2010-05-21 11:41:31 +0100},
	Journal = {The New England Journal of Medicine},
	Number = {6},
	Pages = {302-304},
	Title = {The resistance factor to {\em {P}lasmodium vivax} in blacks. The Duffy-blood-group genotype, FyFy},
	Volume = {295},
	Year = {1976}}

@article{Howes,
	Author = {Rosalind E Howes and Anand P Patil and Fr{\'e}d{\'e}ric B Piel and Oscar A Nyangiri and Peter W Gething and Peter A Zimmerman and C{\'e}line Barnadas and Cynthia M Beall and Amha Gebremedhin and Didier M{\'e}nard and Thomas N Williams and David J Weatherall and Simon I Hay},
	Date-Added = {2010-05-21 11:35:16 +0100},
	Date-Modified = {2010-09-28 15:51:03 +0100},
	Journal = {Nature Communications},
	Title = {The global distribution of the Duffy blood group},
	Volume = {In review},
	Year = {2010}}

@book{lapack,
	Author = {E Anderson and Z Bai and C Bischof and S Blackford and J Demmel and J Dongarra and J Du Croz and A Greenbaum and S Hammarling and A McKenney and D Sorensen},
	Date-Added = {2010-05-21 11:31:02 +0100},
	Date-Modified = {2010-05-21 11:32:15 +0100},
	Edition = {third},
	Publisher = {SIAM},
	Title = {Lapack User's Guide},
	Year = {1999}}

@article{blas,
	Author = {J J Dongarra},
	Date-Added = {2010-05-21 11:28:35 +0100},
	Date-Modified = {2010-05-21 11:29:54 +0100},
	Journal = {International Journal of High Performance Applications and Supercomputing},
	Number = {1},
	Pages = {1-111},
	Title = {Basic Linear Algebra Subprograms Technical Forum Standard},
	Volume = {16},
	Year = {2002}}

@article{gramacy,
	Author = {Gramacy, Robert B and Lee, Herbert K. H.},
	Date-Added = {2010-01-29 15:12:02 +0000},
	Date-Modified = {2010-01-29 15:12:46 +0000},
	Journal = {Journal of the American Statistical Association},
	Number = {483},
	Pages = {1119-1130},
	Title = {Bayesian Treed Gaussian Process Models With an Application to Computer Modeling},
	Volume = {103},
	Year = {2008}}

@misc{tables,
	Author = {Francesc Alted and Ivan Vilata and others},
	Title = {{PyTables}: Hierarchical Datasets in {Python}},
	Url = {http://www.pytables.org/},
	Year = {2002--},
	Bdsk-Url-1 = {http://www.pytables.org/}}

@misc{generic-mbg,
	Author = {Anand Patil},
	Title = {The Malaria Atlas Project's generic model-based geostatistics package},
	Url = {http://github.com/malaria-atlas-project/generic-mbg},
	Year = {2010},
	Bdsk-Url-1 = {http://github.com/malaria-atlas-project/generic-mbg}}

@misc{duffy-code,
	Author = {Anand Patil},
	Title = {The Malaria Atlas Project's Duffy negativity cartography code},
	Url = {http://github.com/malaria-atlas-project/duffy},
	Year = {2010},
	Bdsk-Url-1 = {http://github.com/malaria-atlas-project/duffy}}

@article{map,
	Author = {Hay, Simon I and Guerra, Carlos A and Gething, Peter W and Patil, Anand P and Tatem, Andrew J and Noor, Abdisalan M and Kabaria, Caroline W and Manh, Bui Huu and Elyazar, Iqbal R F and Brooker, Simon J and Smith, D L and Moyeed, Rana A and Snow, Robert W},
	Date-Added = {2010-01-28 18:10:45 +0000},
	Date-Modified = {2010-01-28 18:13:03 +0000},
	Journal = {PLoS Medicine},
	Number = {3},
	Title = {A world malaria map: {\em {P}lasmodium falciparum} endemicity in 2007},
	Volume = {6},
	Year = {2007}}

@book{gamerman,
	Affiliation = {London},
	Author = {D. Gamerman},
	Date-Added = {2010-01-28 17:15:13 +0000},
	Date-Modified = {2010-01-28 17:15:19 +0000},
	Journal = {Book},
	Publisher = {Chapman and Hall},
	Title = {{Markov Chain Monte Carlo: statistical simulation for Bayesian inference}},
	Year = {1997}}

@article{pymc,
	Author = {Anand Patil and David Huard and Christopher Fonnesbeck},
	Date-Added = {2010-01-28 12:42:26 +0000},
	Date-Modified = {2010-01-28 12:45:21 +0000},
	Journal = {Journal of Statistical Software},
	Number = {4},
	Title = {PyMC 2: Bayesian Stochastic Modelling in Python},
	Volume = {35},
	Year = {2010}}

@misc{seeger,
	Author = {Matthias Seeger},
	Date-Added = {2010-01-27 19:14:27 +0000},
	Date-Modified = {2010-01-28 12:48:32 +0000},
	Title = {Package chol_incomplete},
	Url = {http://people.mmci.uni-saarland.de/~mseeger/software/index.html},
	Year = {2005},
	Bdsk-Url-1 = {http://people.mmci.uni-saarland.de/~mseeger/software/index.html}}

@book{isaaks,
	Author = {Isaaks, Edward H. and Srivastava, R. Mohan},
	Date-Added = {2009-12-14 16:57:15 +0000},
	Date-Modified = {2009-12-14 16:59:12 +0000},
	Publisher = {Oxford University Press},
	Title = {An introduction to applied geostatistics},
	Year = {1989}}

@book{gelman,
	Author = {Gelman, Andrew and Carlin, John B. and Stern, Hal S. and Rubin, Donald B.},
	Date-Added = {2007-05-30 14:12:27 -0700},
	Date-Modified = {2007-05-30 14:12:27 -0700},
	Publisher = {Chapman \& Hall / CRC},
	Title = {Bayesian data analysis},
	Year = {2004}}

@book{neuro,
	Author = {Levitan, Irwin B. and Kaczmarek, Leonard K.},
	Date-Added = {2007-05-27 18:42:36 -0700},
	Date-Modified = {2007-05-27 18:43:53 -0700},
	Publisher = {Oxford University Press},
	Title = {The neuron: cell and molecular biology},
	Year = {1997}}

@book{andersonmay,
	Author = {Anderson, Roy M. and May, Robeert M.},
	Date-Added = {2007-05-27 18:39:05 -0700},
	Date-Modified = {2007-05-27 18:40:02 -0700},
	Publisher = {Oxford Science Publications},
	Title = {Infectious diseases of humans: dynamics and control},
	Year = {1992}}

@book{rudin,
	Author = {Rudin, Walter},
	Date-Added = {2007-05-27 18:37:26 -0700},
	Date-Modified = {2007-05-27 18:38:08 -0700},
	Publisher = {McGraw-Hill},
	Title = {Real {\&} complex analysis},
	Year = {1966}}

@book{mathecol,
	Author = {Vandermeer, John H.},
	Date-Added = {2007-05-27 18:31:18 -0700},
	Date-Modified = {2007-05-27 18:37:24 -0700},
	Publisher = {Krieger Publication Co.},
	Title = {Elementary mathematical ecology},
	Year = {1990}}

@book{microecon,
	Author = {Nicholson, Walter},
	Date-Added = {2007-05-27 18:29:29 -0700},
	Date-Modified = {2007-05-27 18:30:18 -0700},
	Edition = {Eighth},
	Publisher = {Thomson Learning},
	Title = {Microeconomic Theory},
	Year = {2002}}

@book{duffy,
	Author = {Duffy, Dean G.},
	Date-Added = {2007-05-27 18:28:28 -0700},
	Date-Modified = {2007-05-27 18:31:07 -0700},
	Publisher = {CRC Press},
	Title = {Advanced Engineering Mathematics},
	Year = {1997}}

@article{convolution,
	Author = {Lee, Herbert K. H. and Higdon, Dave M. and Calder, Catherine A. and Holloman, Christopher H.},
	Date-Added = {2007-05-26 17:20:17 -0700},
	Date-Modified = {2007-05-26 17:21:27 -0700},
	Journal = {Statistical Modelling},
	Number = {1},
	Pages = {53-74},
	Title = {Efficient models for correlated data via convolutions of intrinsic processes},
	Volume = {5},
	Year = {2005}}

@book{spanos,
	Author = {Ghanem, Roger G. and Spanos, Pol D.},
	Date-Added = {2007-05-26 17:16:27 -0700},
	Date-Modified = {2007-05-26 17:17:36 -0700},
	Publisher = {Dover Publications},
	Title = {Stochastic finite elements: a spectral approach},
	Year = {1991}}

@article{sampson,
	Author = {Sampson, P. D. and Guttorp, Peter},
	Date-Added = {2007-05-26 14:03:30 -0700},
	Date-Modified = {2007-05-26 14:05:40 -0700},
	Journal = {Journal of the American Statistical Association},
	Number = {417},
	Pages = {108-119},
	Title = {Nonparametric estimation of nonstationary spatial covariance structure},
	Volume = {87},
	Year = {1992}}

@inproceedings{pachische,
	Author = {Paciorek, Christopher J. and Schervish, Mark J.},
	Booktitle = {NIPS conference proceedings},
	Date-Added = {2007-05-26 13:57:21 -0700},
	Date-Modified = {2007-05-26 14:02:25 -0700},
	Title = {Nonstationary covariance functions for Gaussian process regression},
	Year = {2004}}

@book{numpybook,
	Author = {Oliphant, Travis E.},
	Date-Added = {2007-05-26 13:51:25 -0700},
	Date-Modified = {2007-05-26 13:52:38 -0700},
	Publisher = {Trelgol Publishing},
	Title = {Guide to NumPy},
	Year = {2006}}

@article{ess,
	Author = {Ellner, Stephen P. and Seifu, Yodit and Smith, Robert H.},
	Date-Added = {2007-05-17 21:59:50 -0700},
	Date-Modified = {2007-05-17 22:10:00 -0700},
	Journal = {Ecology},
	Local-Url = {file://localhost/Users/anand/Documents/renearch/Thesis/Qual/docs/ellner_gradient_matching.pdf},
	Number = {8},
	Pages = {2256-2270},
	Title = {Fitting population dynamic models to time-series data by gradient matching},
	Volume = {83},
	Year = {2002}}

@article{mmk,
	Author = {Munch, Stephan B. and Kottas, Athanasios and Mangel, Marc},
	Date-Added = {2007-05-12 18:49:41 -0700},
	Date-Modified = {2007-05-12 20:44:30 -0700},
	Journal = {Canadian Journal of Fisheries and Aquatic Sciences},
	Local-Url = {file://localhost/Users/anand/Documents/renearch/GaussianProcess/stockrecruit.pdf},
	Pages = {1808-1821},
	Title = {Bayesian nonparametric analysis of stock-recruitment relationships},
	Volume = {62},
	Year = {2005}}

@inproceedings{predictivechol,
	Author = {Bach, Francis R. and Jordan, Michael I.},
	Booktitle = {Proceedings of the 22nd International Conference on Machine learning},
	Date-Added = {2007-05-03 23:09:03 -0700},
	Date-Modified = {2007-05-03 23:10:01 -0700},
	Title = {Predictive low-rank decomposition for kernel methods},
	Year = {2005}}

@article{incompchol,
	Author = {Fine, Shai and Scheinberg, Katya},
	Date-Added = {2007-05-03 23:03:55 -0700},
	Date-Modified = {2007-05-17 22:10:25 -0700},
	Journal = {Journal of Machine Learning Research},
	Pages = {243-264},
	Title = {Efficient SVM training using low-rank kernel representations},
	Volume = {2},
	Year = {2001}}

@book{fraccalc,
	Author = {Miller, Kenneth S. and Ross, Betram},
	Date-Added = {2007-05-03 13:00:39 -0700},
	Date-Modified = {2007-05-17 22:10:47 -0700},
	Publisher = {John Wiley and Sons},
	Title = {An introduction to the fractional calculus and fractional differential equations},
	Year = {1993}}

@book{banerjee,
	Author = {Banerjee, Sudipto and Carlin, Bradley P. and Gelfand, Alan E.},
	Date-Added = {2007-05-03 09:32:28 -0700},
	Date-Modified = {2007-05-03 09:36:39 -0700},
	Publisher = {Chapman {\&} Hall / CRC},
	Title = {Heirarchical modeling and analysis for spatial data},
	Year = {2003}}

@book{stein,
	Author = {Stein, Michael L.},
	Date-Added = {2007-05-03 09:30:36 -0700},
	Date-Modified = {2007-05-03 09:34:39 -0700},
	Publisher = {Springer},
	Title = {Interpolation of spatial data: some theory for kriging},
	Year = {1999}}

@book{berry,
	Author = {Berry, Donald A.},
	Date-Added = {2007-04-12 22:04:55 -0700},
	Date-Modified = {2007-05-17 22:10:32 -0700},
	Publisher = {Duxbury Press},
	Title = {Statistics: a Bayesian perspective},
	Year = {1996}}

@manual{bugs,
	Author = {David J Lunn and Andrew Thomas and Nicky Best and David Spiegelhalter},
	Date-Added = {2009-12-21 11:25:32 +0000},
	Date-Modified = {2009-12-21 11:26:45 +0000},
	Journal = {Statistics and Computing},
	Number = {4},
	Pages = {325-337},
	Title = {WinBUGS - A Bayesian modelling framework: Concepts, structure and extensibility},
	Volume = {10},
	Year = {2000}}

@article{haario,
	Author = {Haario, H. and Saksman, E. and Tamminen, J.},
	Date-Added = {2008-03-21 15:19:12 +1300},
	Date-Modified = {2008-03-21 15:19:12 +1300},
	Journal = {Bernoulli},
	Number = {2},
	Pages = {223-242},
	Title = {An adaptive Metropolis algorithm},
	Volume = {7},
	Year = {2001}}
